playnano.analysis package

Subpackages

• playnano.analysis.modules package
  • Submodules
    • playnano.analysis.modules.count_nonzero module
      • CountNonzeroModule
    • playnano.analysis.modules.dbscan_clustering module
      • DBSCANClusteringModule
    • playnano.analysis.modules.feature_detection module
      • FeatureDetectionModule
    • playnano.analysis.modules.k_means_clustering module
      • KMeansClusteringModule
    • playnano.analysis.modules.log_blob_detection module
      • LoGBlobDetectionModule
    • playnano.analysis.modules.particle_tracking module
      • ParticleTrackingModule
    • playnano.analysis.modules.x_means_clustering module
      • XMeansClusteringModule
      • compute_bic()
      • core_xmeans()
      • initialize_centers()
  • Module contents
• playnano.analysis.utils package
  • Submodules
    • playnano.analysis.utils.common module
      • NumpyEncoder
      • export_to_hdf5()
      • load_analysis_from_hdf5()
      • make_json_safe()
      • safe_json_dumps()
      • sanitize_analysis_for_logging()
    • playnano.analysis.utils.frames module
      • frame_summary_to_dataframe()
      • plot_frame_histogram()
    • playnano.analysis.utils.loader module
      • load_analysis_module()
    • playnano.analysis.utils.particles module
      • export_particle_csv()
      • flatten_particle_features()
      • plot_particle_labels_3d()
  • Module contents

Submodules

• playnano.analysis.base module
  • AnalysisModule
    • AnalysisModule.name
    • AnalysisModule.run()
• playnano.analysis.export module
  • export_analysis_to_json()
• playnano.analysis.pipeline module
  • AnalysisPipeline
    • AnalysisPipeline.add()
    • AnalysisPipeline.clear()
    • AnalysisPipeline.run()
  • AnalysisRecord

Module contents

Public package initialization. Analysis modules live here.