playnano package

Subpackages

• playnano.analysis package
  • Subpackages
    • playnano.analysis.modules package
      • Submodules
      • Module contents
    • playnano.analysis.utils package
      • Submodules
      • Module contents
  • Submodules
    • playnano.analysis.base module
      • AnalysisModule
    • playnano.analysis.export module
      • export_analysis_to_json()
    • playnano.analysis.pipeline module
      • AnalysisPipeline
      • AnalysisRecord
  • Module contents
• playnano.cli package
  • Submodules
    • playnano.cli.actions module
    • playnano.cli.entrypoint module
    • playnano.cli.handlers module
    • playnano.cli.utils module
      • ask_for_analysis_params()
      • ask_for_processing_params()
      • get_processing_step_type()
      • is_valid_analysis_step()
      • is_valid_step()
      • parse_analysis_file()
      • parse_analysis_string()
      • parse_processing_file()
      • parse_processing_string()
  • Module contents
• playnano.gui package
  • Subpackages
    • playnano.gui.widgets package
      • Submodules
      • Module contents
  • Submodules
    • playnano.gui.main module
    • playnano.gui.window module
  • Module contents
• playnano.io package
  • Subpackages
    • playnano.io.formats package
      • Submodules
      • Module contents
  • Submodules
    • playnano.io.data_loaders module
      • Functions
      • load_h5_bundle()
      • load_npz_bundle()
      • load_ome_tiff_stack()
    • playnano.io.export_data module
      • Supported formats
      • check_path_is_path()
      • export_bundles()
      • save_h5_bundle()
      • save_npz_bundle()
      • save_ome_tiff_stack()
    • playnano.io.gif_export module
      • Dependencies
      • create_gif_with_scale_and_timestamp()
      • export_gif()
    • playnano.io.loader module
      • get_loader_for_file()
      • get_loader_for_folder()
      • load_afm_stack()
  • Module contents
• playnano.processing package
  • Submodules
    • playnano.processing.core module
      • process_stack()
    • playnano.processing.filters module
      • gaussian_filter()
      • polynomial_flatten()
      • register_filters()
      • remove_plane()
      • row_median_align()
      • zero_mean()
    • playnano.processing.mask_generators module
      • mask_adaptive()
      • mask_below_threshold()
      • mask_mean_offset()
      • mask_morphological()
      • mask_threshold()
      • register_masking()
    • playnano.processing.masked_filters module
      • polynomial_flatten_masked()
      • register_mask_filters()
      • remove_plane_masked()
      • row_median_align_masked()
      • zero_mean_masked()
    • playnano.processing.pipeline module
      • ProcessingPipeline
    • playnano.processing.stack_edit module
      • Functions
      • drop_frame_range()
      • drop_frames()
      • register_stack_edit_processing()
      • select_frames()
    • playnano.processing.video_processing module
      • align_frames()
      • crop_square()
      • intersection_crop()
      • register_video_processing()
      • replace_nan()
      • rolling_frame_align()
      • temporal_mean_filter()
      • temporal_median_filter()
  • Module contents

Submodules

• playnano.afm_stack module
  • AFMImageStack
    • AFMImageStack.data
    • AFMImageStack.pixel_size_nm
    • AFMImageStack.channel
    • AFMImageStack.file_path
    • AFMImageStack.frame_metadata
    • AFMImageStack.processed
    • AFMImageStack.masks
    • AFMImageStack.analysis
    • AFMImageStack.provenance
    • AFMImageStack.apply()
    • AFMImageStack.channel_for_frame()
    • AFMImageStack.export_analysis_log()
    • AFMImageStack.export_processing_log()
    • AFMImageStack.frames_with_metadata()
    • AFMImageStack.get_frame()
    • AFMImageStack.get_frame_metadata()
    • AFMImageStack.get_frame_times()
    • AFMImageStack.get_frames()
    • AFMImageStack.height
    • AFMImageStack.image_shape
    • AFMImageStack.load_data()
    • AFMImageStack.n_frames
    • AFMImageStack.restore_frame_metadata()
    • AFMImageStack.restore_raw()
    • AFMImageStack.time_for_frame()
    • AFMImageStack.width
• playnano.errors module
  • LoadError

Module contents

Public package initialization.