playnano.processing.core module

Core functions for loading and processing AFMImageStacks.

playnano.processing.core.process_stack(input_path: Path, channel: str, steps: List[Tuple[str, Dict]]) → AFMImageStack[source]

Load an AFMImageStack from a file, apply a list of processing steps, and return it.

Parameters:

  • input_path (Path) – Path to the AFM stack file.

  • channel (str) – Channel to load (e.g., ‘h’, ‘z’, etc.).

  • steps (list of tuple) – List of processing steps in the form (step_name, kwargs). Special step_name values: - “clear” : clears the current mask - “mask” : applies a mask function with kwargs - otherwise : treated as a filter name with kwargs

Returns:

The processed AFMImageStack.

Return type:

AFMImageStack

Raises:

LoadError – If the AFM stack cannot be loaded from input_path.